WebFeb 1, 2014 · (a) A diversity profile curve, which plots Hill numbers q D(') as a function of order q, 0 q 3. Hill numbers are calculated for a Zipf-Mandelbrot model (Magurran 2004) … WebJun 18, 2024 · Moreover, Hill numbers can be used to measure not only soundscape diversity, but also taxonomic, functional and phylogenetic diversity, giving metrics a common behaviour, interpretation and standardised unit (Chao et al., 2014). This ensures comparisons between soundscape diversity and other diversity types represent real …
Defining Individual-Level Genetic Diversity and Similarity Profiles
WebHill numbers computation Description. Compute neutral or phylogenetic Hill numbers from a single sample (vector) or count table (matrix). Hill numbers or numbers equivalents of diversity indices are diversity measures that compute diversity in effective number of OTUs, i.e. the number of equally abundant OTUs that would be needed to give the same value of … WebMar 3, 2024 · The R package 'hillR' implements the framework proposed by Chao, et al. 2014 and makes it easy to calculate taxonomic, functional, and phylogenetic diversity of ecological communities as Hill numbers. For each facet of diversity, 'hillR' has three functions. The first set of functions (hill_taxa, hill_func, and hill_phylo) calculates alpha … city grocery menu
hilldiv package - RDocumentation
WebJun 9, 2015 · The order q of the Hill number determines the weighting given to more common species, with species richness defined by q=0. Other Hill numbers are the exponential Shannon index (q=1), and the ... WebOct 19, 2011 · Institute of Ecology and Systematic. You can follow the approach of Chao et al (2014): plot the diversity curves for q=0,1,2 and use the Confident Intervals to tell you whether the differences are ... WebApr 2, 2024 · We define a series of the Hill numbers for SNP diversity at different diversity order q = 0, 1, 2, … as SNP diversity profile, that is, a series of Hill numbers corresponding to different non ... did andrew taggart and halsey date